Ananda Rangapillai Library
Pondicherry University
Bioinformatics ( 307 Title(s) ) |
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1   3D-LogP: An Alignment-Free 3D Description of Local Lipophilicity for QSAR Studies       Author : Author(s): Jérôme Gomar, Elie Giraud, David Turner, Roger Lahana, Pierre Alain Carrupt |
2   A Gentle Guide to the Analysis of Metabolomic Data       Author : Author(s): Ralf Steuer, Katja Morgenthal, Wolfram Weckwerth, Joachim Selbig |
3   A High-Performance Reconfigurable Computing Solution for Peptide Mass Fingerprinting       Author : Author(s): Daniel Coca, Istvan Bogdan, Robert J. Beynon |
4   A Maximum Likelihood Method for Reconstruction of the Evolution of Eukaryotic Gene Structure       Author : Author(s): Liran Carmel, Igor B. Rogozin, Yuri I. Wolf, Eugene V. Koonin |
5   A Web-Based Chemoinformatics System for Drug Discovery       Author : Author(s): Scott D. Bembenek, Brett A. Tounge, Steven J. Coats, Charles H. Reynolds |
6   Allergen Microarrays       Author : Author(s): Tito Bacarese-Hamilton, Julian Gray, Andrea Ardizzoni, Andrea Crisanti |
7   An Introduction to Protein Contact Prediction       Author : Author(s): Nicholas Hamilton, Thomas Huber |
8   An Introduction to Proteome Bioinformatics       Author : Author(s): Andrew R. Jones, Simon J. Hubbard |
9   An Overview of Label-Free Quantitation Methods in Proteomics by Mass Spectrometry       Author : Author(s): Jason W. Wong, Gerard Cagney |
10   Analysis of Genomic DNA with the UCSC Genome Browser       Author : Author(s): Jonathan Pevsner |
11   Analysis of Mass Spectrometry Data in Proteomics       Author : Author(s): Rune Matthiesen, Ole N. Jensen |
12   Analysis of Quantitative Trait Loci Mario Falchi       Author : Author(s): Mario Falchi |
13   Analysis of Transposable Element Sequences Using CENSOR and RepeatMasker       Author : Author(s): Ahsan Huda, I. King Jordan |
14   Annotating Sequence Data Using Genotator       Author : Author(s): Nomi L. Harris |
15   Application of Chemoinformatics to High-Throughput Screening: Practical Considerations       Author : Author(s): Christian N. Parker, Suzanne K. Schreyer |
16   Application of Liquid Chromatography-Mass Spectrometry Analysis in Metabolomics: Reversed-Phase Monolithic Capillary Chromatography and Hydrophilic Chromatography Coupled to Electrospray Ionization-Mass Spectrometry       Author : Author(s): Vladimir V. Tolstikov, Oliver Fiehn, Nobuo Tanaka |
17   Applications of Bioinformatics to Protein Structures: How Protein Structure and Bioinformatics Overlap       Author : Author(s): Gye Won Han, Chris Rife, Michael R. Sawaya |
18   Applications of the Universal DNA Microarray in Molecular Medicine       Author : Author(s): Reyna Favis, Norman P. Gerry, Yu-Wei Cheng, Francis Barany |
19   Approaches to Target Class Combinatorial Library Design       Author : Author(s): Dora Schnur, Brett R. Beno, Andrew Good, Andrew Tebben |
20   Automated Generic Analysis Tools for Protein Quantitation Using Stable Isotope Labeling       Author : Author(s): Wen-Lian Hsu, Ting-Yi Sung |
21   Automated Patch Clamping Using the QPatch       Author : Author(s): Kenneth A. Jones, Nicoletta Garbati, Hong Zhang, Charles H. Large |
22   Basic Microarray Analysis: Strategies for Successful Experiments       Author : Author(s): Scott A. Ness |
23   Bioinformatics Detection of Alternative Splicing       Author : Author(s): Namshin Kim, Christopher Lee |
24   Bioinformatics Methods for Protein Identification Using Peptide Mass Fingerprinting       Author : Author(s): Zhao Song, Luonan Chen, Dong Xu |
25   Bioinformatics Platform Development: From Gene to Lead Compound       Author : Author(s): Alexis S. Ivanov, Alexander V. Veselovsky, Alexander V. Dubanov, Vladlen S. Skvortsov |
26   Bioinformatics Platform Development: From Gene to Lead Compound       Author : Author(s): Alexis S. Ivanov, Alexander V. Veselovsky, Alexander V. Dubanov, Vladlen S. Skvortsov |
27   Biological Network Inference and Analysis Using SEBINI and CABIN       Author : Author(s): Ronald Taylor, Mudita Singhal |
28   Brain Model of Text Animation as a Data Mining Strategy       Author : Author(s): Tamara Astakhova, Vadim Astakhov |
29   Building a Multiuser Sequence Analysis Facility Using Freeware       Author : Author(s): Brian Fristensky |
30   Calculation of Absolute Protein–Ligand Binding Constants with the Molecular Dynamics Free Energy Perturbation Method       Author : Author(s): Hyung-June Woo |
31   Capillary Electrophoresis-Mass Spectrometry for Metabolomics       Author : Author(s): Tomoyoshi Soga |
32   Cell-Based Partitioning       Author : Author(s): Ling Xue, Florence L. Stahura, Jürgen Bajorath |
33   Cellular Assays in HTS       Author : Author(s): Patricia Johnston |
34   Chemical Database Preparation for Compound Acquisition or Virtual Screening       Author : Author(s): Cristian G. Bologa, Marius M. Olah, Tudor I. Oprea |
35   Chemical Database Preparation for Compound Acquisition or Virtual Screening       Author : Author(s): Cristian G. Bologa, Marius M. Olah, Tudor I. Oprea |
36   Clinical Applications of Bioinformatics, Genomics, and Pharmacogenomics       Author : Author(s): Omer Iqbal, Jawed Fareed |
37   Clinical Uses of Microarrays in Cancer Research       Author : Author(s): Carl Virtanen, James Woodgett |
38   Clustering       Author : Author(s): Geoffrey J. McLachlan, Richard W. Bean, Shu-Kay Ng |
39   CodonExplorer: An Interactive Online Database for the Analysis of Codon Usage and Sequence Composition       Author : Author(s): Jesse Zaneveld, Micah Hamady, Noboru Sueoka, Rob Knight |
40   Combinatorial Optimization Models for Finding Genetic Signatures from Gene Expression Datasets       Author : Author(s): Regina Berretta, Wagner Costa, Pablo Moscato |
41   Comparative Modeling of Proteins       Author : Author(s): Gerald H. Lushington |
42   Comparing Algorithms for Clustering of Expression Data: How to Assess Gene Clusters       Author : Author(s): Golan Yona, William Dirks, Shafquat Rahman |
43   Comparison of Methods Based on Diversity and Similarity for Molecule Selection and the Analysis of Drug Discovery Data       Author : Author(s): Raymond L.H. Lam, William J. Welch |
44   Comparison of Protein Force Fields for Molecular Dynamics Simulations       Author : Author(s): Olgun Guvench, Alexander D. MacKerell |
45   Comparison of SPA, FRET, and FP for Kinase Assays       Author : Author(s): Jinzi J. Wu |
46   Compound Library Management       Author : Author(s): James A. Chan, Juan A. Hueso-Rodríguez |
47   Compound Library Management: An Overview of an Automated System       Author : Author(s): Wilma W. Keighley, Terry P. Wood |
48   Computational Approaches for Gene Identification       Author : Author(s): Gautam B. Singh |
49   Computational Approaches to Peptide Identification via Tandem MS       Author : Author(s): Simon J. Hubbard |
50   Computational Diagnostics with Gene Expression Profiles       Author : Author(s): Claudio Lottaz, Dennis Kostka, Florian Markowetz, Rainer Spang |
51   Computational Gene Annotation in New Genome Assemblies Using GeneID       Author : Author(s): Enrique Blanco, Josep F. Abril |
52   Computational Reconstruction of Protein–Protein Interaction Networks: Algorithms and Issues       Author : Author(s): Eric Franzosa, Bolan Linghu, Yu Xia |
53   Computational Representation of Biological Systems       Author : Author(s): Zach Frazier, Jason McDermott, Michal Guerquin, Ram Samudrala |
54   Computational Resources for the Prediction and Analysis of Native Disorder in Proteins       Author : Author(s): Melissa M. Pentony, Jonathan Ward, David T. Jones |
55   Computational Tools for the Analysis of Rearrangements in Mammalian Genomes       Author : Author(s): Guillaume Bourque, Glenn Tesler |
56   Computer Resources for the Clinical and Molecular Geneticist       Author : Author(s): Yuval Yaron, Avi Orr-Urtreger |
57   Computer-Assisted Analysis of Transcription Control Regions: MatInspector and Other Programs       Author : Author(s): Thomas Werner |
58   Computer-Assisted Reading of DNA Sequences       Author : Author(s): Huong Le, Marcus Hinchcliffe, Bing Yu, Ronald J. Trent |
59   Computing with DNA       Author : Author(s): Lila Kari, Laura F. Landweber |
60   Conductivity Detection on Microchips       Author : Author(s): Roland Hergenröder, Benedikt Gra? |
61   Configuring Radioligand Receptor Binding Assays for HTS Using Scintillation Proximity Assay Technology       Author : Author(s): John W. Carpenter, Carmen Laethem, Frederick R. Hubbard, Thomas K. Eckols, Melvyn Baez, Don McClure, David L. Nelson, Paul A. Johnston |
62   Conformational Changes in Protein Function       Author : Author(s): Haiguang Liu, Shubhra Ghosh Dastidar, Hongxing Lei, Wei Zhang, Matthew C. Lee, Yong Duan |
63   Connecting Protein Interaction Data, Mutations, and Disease Using Bioinformatics       Author : Author(s): Jake Y. Chen, Eunseog Youn, Sean D. Mooney |
64   Constructing Computational Pipelines       Author : Author(s): Mark Halling-Brown, Adrian J. Shepherd |
65   Controlled Agitation During Hybridization: Surface Acoustic Waves Are Shaking Up Microarray Technology       Author : Author(s): Achim Wixforth |
66   Creation of a Small High-Throughput Screening Facility       Author : Author(s): Tod Flak |
67   Cross Species Proteomics       Author : Author(s): J. C. Wright, R. J. Beynon, S. J. Hubbard |
68   Current Computational Methods for Prioritizing Candidate Regulatory Polymorphisms       Author : Author(s): Stephen Montgomery |
69   De Novo Sequencing Methods in Proteomics       Author : Author(s): Christopher Hughes, Bin Ma, Gilles A. Lajoie |
70   Derivation and Applications of Molecular Descriptors Based on Approximate Surface Area       Author : Author(s): Paul Labute |
71   Design and Implementation of an Introductory Course for Computer Applications in Molecular Biology and Genetics       Author : Author(s): Stephen A. Krawetz |
72   Design and Implementation of High Throughput Screening Assays       Author : Author(s): Ricardo Macarrón, Robert P. Hertzberg |
73   Design and Implementation of High-Throughput Screening Assays       Author : Author(s): Ricardo Macarrón, Robert P. Hertzberg |
74   Designing Combinatorial Libraries Optimized on Multiple Objectives       Author : Author(s): Valerie J. Gillet |
75   Detecting Biological Patterns The Integration of Databases, Models, and Algorithms       Author : Author(s): Gautam B. Singh |
76   Detecting Genetic Recombination       Author : Author(s): Georg F. Weiller |
77   Detecting Hierarchical Modularity in Biological Networks       Author : Author(s): Erzsébet Ravasz |
78   Detecting Lateral Genetic Transfer: A Phylogenetic Approach       Author : Author(s): Robert G. Beiko, Mark A. Ragan |
79   Detecting Signatures of Selection from DNA Sequences Using Datamonkey       Author : Author(s): Art F.Y. Poon, Simon D.W. Frost, Sergei L. Pond |
80   Detecting the Presence and Location of Selection in Proteins       Author : Author(s): Tim Massingham |
81   Determination of Metabolic Flux Ratios From 13C-Experiments and Gas Chromatography-Mass Spectrometry Data: Protocol and Principles       Author : Author(s): Annik Nanchen, Tobias Fuhrer, Uwe Sauer |
82   Developing a DNA Variant Database       Author : Author(s): David C.Y. Fung |
83   Developing an Ontology       Author : Author(s): Midori A. Harris |
84   Developing Decision Support Systems in Clinical Bioinformatics       Author : Author(s): Vitali Sintchenko, Enrico Coiera |
85   Developing Fixed-Parameter Algorithms to Solve Combinatorially Explosive Biological Problems       Author : Author(s): Falk Hüffner, Rolf Niedermeier, Sebastian Wernicke |
86   Discovering New Drug-Targeting Sites on Flexible Multidomain Protein Kinases: Combining Segmental Isotopic and Site-Directed Spin Labeling for Nuclear Magnetic Resonance Detection of Interfacial Clefts       Author : Author(s): Thomas K. Harris |
87   Discovering New Drug-Targeting Sites on Flexible Multidomain Protein Kinases: Combining Segmental Isotopic and Site-Directed Spin Labeling for Nuclear Magnetic Resonance Detection of Interfacial Clefts       Author : Author(s): Thomas K. Harris |
88   Discovering Sequence Motifs       Author : Author(s): Timothy L. Bailey |
89   DNA Separations       Author : Author(s): Andrea W. Chow |
90   DNA Sequence Polymorphism Analysis Using DnaSP       Author : Author(s): Julio Rozas |
91   DNASTAR’s Lasergene Sequence Analysis Software       Author : Author(s): Timothy G. Burland |
92   eConsulting       Author : Author(s): Siaw-Teng Liaw, Peter Schattner |
93   Effects of Functional Bias on Supervised Learning of a Gene Network Model       Author : Author(s): Insuk Lee, Edward M. Marcotte |
94   Electrochemiluminescence: A Technology Evaluation and Assay Reformatting of the Stat6/P578 Protein-Peptide Interaction       Author : Author(s): Robert H. Schweitzer, Laura Abriola |
95   Enabling Public Data Sharing: Encouraging Scientific Discovery and Education       Author : Author(s): Christine Fennema-Notestine |
96   Enhanced Protein Profiling Arrays for Quantitative Measurement of Protein Expression in Multiple Samples       Author : Author(s): Ruochun Huang, Qian Shi, Weimin Yang, Ruo-Pan Huang |
97   Enzyme Function Prediction with Interpretable Models       Author : Author(s): Umar Syed, Golan Yona |
98   Estimating Maximum Likelihood Phylogenies with PhyML       Author : Author(s): Stéphane Guindon, Frédéric Delsuc, Jean-François Dufayard, Olivier Gascuel |
99   Evaluating DNA Sequence Variants of Unknown Biological Significance       Author : Author(s): Scott A. Grist, Andrew Dubowsky, Graeme Suthers |
100   Evaluation of Molecular Similarity and Molecular Diversity Methods Using Biological Activity Data       Author : Author(s): Peter Willett |
101   Exploring Pathways from Gene Co-expression to Network Dynamics       Author : Author(s): Huai Li, Yu Sun, Ming Zhan |
102   Expression and Microarrays       Author : Author(s): Joaquín Dopazo, Fátima Al-Shahrour |
103   Fabrication of a Glass Capillary Electrophoresis Microchip With Integrated Electrodes       Author : Author(s): Mark M. Crain, Robert S. Keynton, Kevin M. Walsh, Thomas J. Roussel, Richard P. Baldwin, John F. Naber, Douglas J. Jackson |
104   Fabrication of Polymer Microfluidic Systems by Hot Embossing and Laser Ablation       Author : Author(s): Laurie E. Locascio, David J. Ross, Peter B. Howell, Michael Gaitan |
105   Finding Genes in Genome Sequence       Author : Author(s): Alice Carolyn McHardy |
106   Fixed-Parameter Algorithms in Phylogenetics       Author : Author(s): Jens Gramm, Arfst Nickelsen, Till Tantau |
107   Flexible Sequence Similarity Searching with the FASTA3 Program Package       Author : Author(s): William R. Pearson |
108   Free Energy Calculations Applied to Membrane Proteins       Author : Author(s): Christophe Chipot |
109   Free Software in Molecular Biology for Macintosh and MS Windows Computers       Author : Author(s): Don Gilbert |
110   From Microarray to Biological Networks: Analysis of Gene Expression Profiles       Author : Author(s): Xiwei Wu, T. Gregory Dewey |
111   From Microarray to Biological Networks: Analysis of Gene Expression Profiles       Author : Author(s): Xiwei Wu, T. Gregory Dewey |
112   Fully Automated Screening Systems       Author : Author(s): Seth Cohen, Robert F. Trinka |
113   GCG:: The Wisconsin Package of Sequence Analysis Programs       Author : Author(s): David D. Womble |
114   Gene Evolution and Drug Discovery       Author : Author(s): James O. McInerney, Caroline S. Finnerty, Jennifer M. Commins, Gayle K. Philip |
115   Gene Model Detection Using Mass Spectrometry       Author : Author(s): Bindu Nanduri, Nan Wang, Mark L. Lawrence, Susan M. Bridges, Shane C. Burgess |
116   Gene Orthology Assessment with OrthologID       Author : Author(s): Mary Egan, Ernest K. Lee, Joanna C. Chiu, Gloria Coruzzi, Rob DeSalle |
117   Genetic Algorithms for Classification of Olfactory Stimulants       Author : Author(s): Barry K. Lavine, Charles E. Davidson, Curt Breneman, William Kaat |
118   Genetic Code Prediction for Metazoan Mitochondria with GenDecoder       Author : Author(s): Federico Abascal, Rafael Zardoya, David Posada |
119   Genetic Signatures for a Rodent Model of Parkinson's Disease Using Combinatorial Optimization Methods       Author : Author(s): Mou'ath Hourani, Regina Berretta, Alexandre Mendes, Pablo Moscato |
120   Genome Annotation       Author : Author(s): Hideya Kawaji, Yoshihide Hayashizaki |
121   Genome Rearrangement by the Double Cut and Join Operation       Author : Author(s): Richard Friedberg, Aaron E. Darling, Sophia Yancopoulos |
122   Genotyping Single-Nucleotide Polymorphisms by Minisequencing Using Tag Arrays       Author : Author(s): Lovisa Lovmar, Ann-Christine Syvänen |
123   Guidance for Data Collection and Computational Modelling of Regulatory Networks       Author : Author(s): Adam Christopher Palmer, Keith Edward Shearwin |
124   High-Performance Liquid Chromatography Separations Coupled With Coulometric Electrode Array Detectors: A Unique Approach to Metabolomics       Author : Author(s): Bruce S. Kristal, Yevgeniya I. Shurubor, Rima Kaddurah-Daouk, Wayne R. Matson |
125   High-Throughput Screening of the Cyclic AMP-Dependent Protein Kinase (PKA) Using the Caliper Microfluidic Platform       Author : Author(s): Leonard J. Blackwell, Steve Birkos, Rhonda Hallam, Gretchen Van De Carr, Jamie Arroway, Carla M. Suto, William P. Janzen |
126   Homogeneous Techniques for Monitoring Receptor-Ligand Interactions       Author : Author(s): James S. Marks, Douglas S. Burdette, David A. Giegel |
127   How to Describe Chirality and Conformational Flexibility       Author : Author(s): Gordon M. Crippen |
128   Hybrid Quantum and Classical Methods for Computing Kinetic Isotope Effects of Chemical Reactions in Solutions and in Enzymes       Author : Author(s): Jiali Gao, Dan T. Major, Yao Fan, Yen-lin Lin, Shuhua Ma, Kin-Yiu Wong |
129   Identification and Characterization of Microbial Proteins Using Peptide Mass Fingerprinting Strategies       Author : Author(s): Jonathan W. Arthur |
130   Identification of cis-Regulatory Elements in Gene Co-expression Networks Using A-GLAM       Author : Author(s): Leonardo Mariño-Ramírez, Kannan Tharakaraman, Olivier Bodenreider, John Spouge, David Landsman |
131   Identifying Components of Complexes       Author : Author(s): Nicolas Goffard, Georg Weiller |
132   Identifying Putative Drug Targets and Potential Drug Leads: Starting Points for Virtual Screening and Docking       Author : Author(s): David S. Wishart |
133   Implicit Membrane Models for Membrane Protein Simulation       Author : Author(s): Michael Feig |
134   In Silico Gene Discovery       Author : Author(s): Bing Yu |
135   In Silico Protein Design: Fitting Sequence Onto Structure       Author : Author(s): Bassil I. Dahiyat |
136   In Silico Protein Design: Fitting Sequence Onto Structure       Author : Author(s): Bassil I. Dahiyat |
137   Inferring Ancestral Gene Order       Author : Author(s): Julian M. Catchen, John S. Conery, John H. Postlethwait |
138   Inferring Ancestral Protein Interaction Networks       Author : Author(s): José M. Peregrín-Alvarez |
139   Inferring Function from Homology       Author : Author(s): Richard D. Emes |
140   Inferring Functional Relationships from Conservation of Gene Order       Author : Author(s): Gabriel Moreno-Hagelsieb |
141   Inferring Molecular Interactions Pathways from eQTL Data       Author : Author(s): Imran Rashid, Jason McDermott, Ram Samudrala |
142   Inferring Patterns of Migration       Author : Author(s): Paul M.E. Bunje, Thierry Wirth |
143   Inferring Protein–Protein Interactions from Multiple Protein Domain Combinations       Author : Author(s): Simon P. Kanaan, Chengbang Huang, Stefan Wuchty, Danny Z. Chen, Jesús A. Izaguirre |
144   Inferring Trees       Author : Author(s): Simon Whelan |
145   Informatics and Statistics for Analyzing 2-D Gel Electrophoresis Images       Author : Author(s): Andrew W. Dowsey, Jeffrey S. Morris, Howard B. Gutstein, Guang-Zhong Yang |
146   Integrating Functional Genomics Data       Author : Author(s): Insuk Lee, Edward M. Marcotte |
147   Integrating Profiling Data: Using Linear Correlation to Reveal Coregulation of Transcript and Metabolites       Author : Author(s): Ewa Urbanczyk-Wochniak, Lothar Willmitzer, Alisdair R. Fernie |
148   Integrative Profiling of Metabolites and Proteins: Improving Pattern Recognition and Biomarker Selection for Systems Level Approaches       Author : Author(s): Katja Morgenthal, Stefanie Wienkoop, Florian Wolschin, Wolfram Weckwerth |
149   Interfacing Amperometric Detection With Microchip Capillary Electrophoresis       Author : Author(s): R. Scott Martin |
150   Interfacing Microchip Capillary Electrophoresis With Electrospray Ionization Mass Spectrometry       Author : Author(s): Trust Razunguzwa, Aaron T. Timperman |
151   Introduction to Microarray Experimentation and Analysis       Author : Author(s): Peter Gieser, Gregory C. Bloom, Emmanuel N. Lazaridis |
152   Introduction to Screening Automation       Author : Author(s): Steven Hamilton |
153   Kinetic Modeling of Biological Systems       Author : Author(s): Haluk Resat, Linda Petzold, Michel F. Pettigrew |
154   Knowledge Discovery via Machine Learning for Neurodegenerative Disease Researchers       Author : Author(s): I. Burak Özyurt, Gregory G. Brown |
155   Learning Global Models of Transcriptional Regulatory Networks from Data       Author : Author(s): Aviv Madar, Richard Bonneau |
156   Linking Image Quantitation and Data Analysis       Author : Author(s): Gregory C. Bloom, Peter Gieser, Emmanuel N. Lazaridis |
157   Low Cost Gel Analysis       Author : Author(s): Jeffry A. Reidler |
158   MacVector: Integrated Sequence Analysis for the Macintosh       Author : Author(s): Promila A. Rastogi |
159   Management and Maintenance of High Throughput Screening Systems       Author : Author(s): Barbara Hynd |
160   Management of Information in Distributed Biomedical Collaboratories       Author : Author(s): David B. Keator |
161   Managing Experimental Data Using FuGE       Author : Author(s): Andrew R. Jones, Allyson L. Lister |
162   Managing Sequence Data       Author : Author(s): Ilene Karsch Mizrachi |
163   Mass Spectrometer Output File Format mzML       Author : Author(s): Eric W. Deutsch |
164   Measuring Electroosmotic Flow in Microchips and Capillaries       Author : Author(s): S. Douglass Gilman, Peter J. Chapman |
165   Measuring the Effects of Genes and Environment on Complex Traits       Author : Author(s): Jennifer H. Barrett |
166   Mediator Infrastructure for Information Integration and Semantic Data Integration Environment for Biomedical Research       Author : Author(s): Jeffrey S. Grethe, Edward Ross, David Little, Brian Sanders, Amarnath Gupta, Vadim Astakhov |
167   Membrane-Associated Proteins and Peptides       Author : Author(s): Marc F. Lensink |
168   Metabolite Profiling in Blood Plasma       Author : Author(s): Oliver Fiehn, Tobias Kind |
169   Metabolomic Profiling of Natural Volatiles: Headspace Trapping: GC-MS       Author : Author(s): Yury M. Tikunov, Francel W. Verstappen, Robert D. Hall |
170   Methods for Applying the Quantitative Structure-Activity Relationship Paradigm       Author : Author(s): Emilio Xavier Esposito, Anton J. Hopfinger, Jeffry D. Madura |
171   Methods for the Inference of Biological Pathways and Networks       Author : Author(s): Roger E. Bumgarner, Ka Yee Yeung |
172   Methods of Information Geometry in Computational System Biology (Consistency between Chemical and Biological Evolution)       Author : Author(s): Vadim Astakhov |
173   Methods to Reconstruct and Compare Transcriptional Regulatory Networks       Author : Author(s): M. Madan Babu, Benjamin Lang, L. Aravind |
174   Micro-Molding for Poly(dimethylsiloxane) Microchips       Author : Author(s): Carlos D. García, Charles S. Henry |
175   Microarray Analysis in Drug Discovery and Clinical Applications       Author : Author(s): Siqun Wang, Qiong Cheng |
176   Microarrays for the Study of Viral Gene Expression During Human Cytomegalovirus Latent Infection       Author : Author(s): Barry Slobedman, Allen K. Cheung |
177   Microarrays—Analysis of Signaling Pathways       Author : Author(s): Anassuya Ramachandran, Michael A. Black, Andrew N. Shelling, Donald R. Love |
178   Microarrays—Identifying Molecular Portraits for Prostate Tumors with Different Gleason Patterns       Author : Author(s): Alexandre Mendes, Rodney J. Scott, Pablo Moscato |
179   Microarrays—Planning Your Experiment       Author : Author(s): Jean Yee Yang |
180   Microchip Capillary Electrophoresis: An Introduction       Author : Author(s): Charles S. Henry |
181   Microchip Capillary Electrophoresis: Application to Peptide Analysis       Author : Author(s): Barbara A. Fogarty, Nathan A. Lacher, Susan M. Lunte |
182   Mining for SNPs and SSRs Using SNPServer, dbSNP and SSR Taxonomy Tree       Author : Author(s): Jacqueline Batley, David Edwards |
183   Mining Proteomic MS/MS Data for MRM Transitions       Author : Author(s): Jennifer A. Chem (Mead), Luca Bianco, Conrad Bessant |
184   Modeling of Protein Misfolding in Disease       Author : Author(s): Edyta B. Ma?olepsza |
185   Modeling Sequence Evolution       Author : Author(s): Pietro Liò, Martin Bishop |
186   Models for Determining Genetic Susceptibility and Predicting Outcome       Author : Author(s): Peter W. Jones, Richard C. Strange, Sud Ramachandran, Anthony Fryer |
187   Molecular Diagnostic Testing for Inherited Thrombophilia Using Invader®       Author : Author(s): Margaret A. Keller |
188   Molecular Docking       Author : Author(s): Garrett M. Morris, Marguerita Lim-Wilby |
189   Molecular Dynamics Simulations       Author : Author(s): Erik R. Lindahl |
190   Molecular Dynamics Simulations of Membrane Proteins       Author : Author(s): Philip C. Biggin, Peter J. Bond |
191   Molecular Interactions and Data Standardisation       Author : Author(s): Sandra Orchard, Samuel Kerrien |
192   Molecular Similarity Concepts and Search Calculations       Author : Author(s): Jens Auer, Jürgen Bajorath |
193   Molecular Similarity Measures       Author : Author(s): Gerald M. Maggiora, Veerabahu Shanmugasundaram |
194   Monte Carlo Simulations       Author : Author(s): David J. Earl, Michael W. Deem |
195   Multiple Alignment of DNA Sequences with MAFFT       Author : Author(s): Kazutaka Katoh, George Asimenos, Hiroyuki Toh |
196   Multiple Sequence Alignment       Author : Author(s): Walter Pirovano, Jaap Heringa |
197   Multiple Tests for Genetic Effects in Association Studies       Author : Author(s): Peter H. Westfall, Dmitri V. Zaykin, S. Stanley Young |
198   Multiplexed Cytokine Sandwich Immunoassays Clinical Applications       Author : Author(s): Uma Prabhakar, Edward Eirikis, Bruce E. Miller, Hugh M. Davis |
199   Multiplexed Protein Analysis Using Antibody Microarrays and Label-Based Detection       Author : Author(s): Brian B. Haab |
200   Natural Products or Not? How to Screen for Natural Products in the Emerging HTS Paradigm       Author : Author(s): Susan P. Manly, Ramesh Padmanabha, Susan E. Lowe |
201   Network Computing: Restructuring How Scientists Use Computers and What We Get Out of Them       Author : Author(s): Brian Fristensky |
202   Network Dynamics       Author : Author(s): Herbert M. Sauro |
203   New Strategies in Drug Discovery       Author : Author(s): Eliot H. Ohlstein, Anthony G. Johnson, John D. Elliott, Anne M. Romanic |
204   Noncontact Laser Microdissection and Pressure Catapulting: Sample Preparation for Genomic, Transcriptomic, and Proteomic Analysis       Author : Author(s): Yilmaz Niyaz, Monika Stich, Bernd Sägmüller, Renate Burgemeister, Gabriele Friedemann, Ulrich Sauer, Rainer Gangnus, Karin Schütze |
205   Nonsupervised Construction and Application of Mass Spectral and Retention Time Index Libraries From Time-of-Flight Gas Chromatography-Mass Spectrometry Metabolite Profiles       Author : Author(s): Alexander Erban, Nicolas Schauer, Alisdair R. Fernie, Joachim Kopka |
206   Normal Modes and Essential Dynamics       Author : Author(s): Steven Hayward, Bert L. Groot |
207   Novel Scoring Methods in Virtual Ligand Screening       Author : Author(s): Daniel Pick |
208   Nuclear Magnetic Resonance Metabonomics: Methods for Drug Discovery and Development       Author : Author(s): Karl-Heinz Ott, Nelly Aranibar |
209   Nuclear Magnetic Resonance-Based Modeling and Refinement of Protein Three-Dimensional Structures and Their Complexes       Author : Author(s): Gloria Fuentes, Aalt D. Dijk, Alexandre M. Bonvin |
210   Nuclear Magnetic Resonance-Based Screening Methods for Drug Discovery       Author : Author(s): Laurel O. Sillerud, Richard S. Larson |
211   Nuclear Magnetic Resonance-Based Screening Methods for Drug Discovery       Author : Author(s): Laurel O. Sillerud, Richard S. Larson |
212   Omiga: A PC-Based Sequence Analysis Tool       Author : Author(s): Jeffrey A. Kramer |
213   Online Resources for the Molecular Contextualization of Disease       Author : Author(s): Chi N.I. Pang, Marc R. Wilkins |
214   Ontology-Driven Approaches to Analyzing Data in Functional Genomics       Author : Author(s): Francisco Azuaje, Fatima Al-Shahrour, Joaquin Dopazo |
215   OpenMS and TOPP: Open Source Software for LC-MS Data Analysis       Author : Author(s): Knut Reinert, Oliver Kohlbacher |
216   Optimization of the MAD Algorithm for Virtual Screening       Author : Author(s): Hanna Eckert, Jürgen Bajorath |
217   Partitioning in Binary-Transformed Chemical Descriptor Spaces       Author : Author(s): Jeffrey W. Godden, Jürgen Bajorath |
218   PepTool™ and GeneTool™:: Platform-Independent Tools for Biological Sequence Analysis       Author : Author(s): David S. Wishart, Paul Stothard, Gary H. Domselaar |
219   Phylogenetic Analysis Using PHYLIP       Author : Author(s): Jacques D. Retief |
220   Phylogenetic Model Evaluation       Author : Author(s): Lars Sommer Jermiin, Vivek Jayaswal, Faisal Ababneh, John Robinson |
221   Phylogenetic Profiling       Author : Author(s): Shailesh V. Date, José M. Peregrín-Alvarez |
222   Phylogenetic Shadowing: Sequence Comparisons of Multiple Primate Species       Author : Author(s): Dario Boffelli |
223   Polyelectrolyte Coatings for Microchip Capillary Electrophoresis       Author : Author(s): Yan Liu, Charles S. Henry |
224   Power and Sample Size Considerations in Molecular Biology       Author : Author(s): L. Jane Goldsmith |
225   Power of the Rank Test for Multi-Strata Case-Control Studies with Ordinal Exposure Variables       Author : Author(s): Grzegorz A. Rempala, Stephen W. Looney |
226   Practical Aspects of Uniform Stable Isotope Labeling of Higher Plants for Heteronuclear NMR-Based Metabolomics       Author : Author(s): Jun Kikuchi, Takashi Hirayama |
227   Pre-Processing of Microarray Data and Analysis of Differential Expression       Author : Author(s): Steffen Durinck |
228   Prediction and Integration of Regulatory and Protein–Protein Interactions       Author : Author(s): Duangdao Wichadakul, Jason McDermott, Ram Samudrala |
229   Prediction of Drug-Like Molecular Properties: Modeling Cytochrome P450 Interactions       Author : Author(s): Mehran Jalaie, Rieko Arimoto, Eric Gifford, Sabine Schefzick, Chris L. Waller |
230   Prediction of Protein–Protein Interactions: A Study of the Co-evolution Model       Author : Author(s): Itai Sharon, Jason V. Davis, Golan Yona |
231   Prediction of Regulatory Elements       Author : Author(s): Albin Sandelin |
232   Primer3 on the WWW for General Users and for Biologist Programmers       Author : Author(s): Steve Rozen, Helen Skaletsky |
233   Processes Parallel Execution Using Grid Wizard Enterprise       Author : Author(s): Marco Ruiz |
234   Promoter Analysis: Gene Regulatory Motif Identification with A-GLAM       Author : Author(s): Leonardo Mariño-Ramírez, Kannan Tharakaraman, John L. Spouge, David Landsman |
235   Protein Comparative Sequence Analysis and Computer Modeling       Author : Author(s): Brett D. Hambly, Cecily E. Oakley, Piotr G. Fajer |
236   Protein Folding and Unfolding by All-Atom Molecular Dynamics Simulations       Author : Author(s): Hongxing Lei, Yong Duan |
237   Protein Interactions Probed With Mass Spectrometry       Author : Author(s): Suma Kaveti, John R. Engen |
238   Protein Microarray-Based Screening of Antibody Specificity       Author : Author(s): Rhonda Bangham, Gregory A. Michaud, Barry Schweitzer, Paul F. Predki |
239   Protein Separations       Author : Author(s): Andrea W. Chow |
240   Protein Structure Determination by X-Ray Crystallography       Author : Author(s): Andrea Ilari, Carmelinda Savino |
241   Protein Structure Prediction       Author : Author(s): Bissan Al-Lazikani, Emma E. Hill, Veronica Morea |
242   Protein Structure Prediction Based on Sequence Similarity       Author : Author(s): Lukasz Jaroszewski |
243   Proteomics Data Collection (ProDaC): Publishing and Collecting Proteomics Data Sets in Public Repositories Using Standard Formats       Author : Author(s): Christian Stephan, Martin Eisenacher, Michael Kohl, Helmut E. Meyer |
244   Rapid DNA Amplification in Glass Microdevices       Author : Author(s): Christopher J Easley, Lindsay A. Legendre, James P. Landers, Jerome P. Ferrance |
245   Rapid Screening for 31 Mutations and Polymorphisms in the Cystic Fibrosis Transmembrane Conductance Regulator Gene by Luminex® xMAP™ Suspension Array       Author : Author(s): Sherry A. Dunbar, James W. Jacobson |
246   Receptor Flexibility for Large-Scale In Silico Ligand Screens: Chances and Challenges       Author : Author(s): B. Fischer, H. Merlitz, W. Wenzel |
247   Receptor-Binding Sites: Bioinformatic Approaches       Author : Author(s): Darren R. Flower |
248   Receptor-Binding Sites: Bioinformatic Approaches       Author : Author(s): Darren R. Flower |
249   Recombination Detection and Analysis Using RDP3       Author : Author(s): Darren P. Martin |
250   Reconstruction of Full-Length Isoforms from Splice Graphs       Author : Author(s): Yi Xing, Christopher Lee |
251   Resources at EBI       Author : Author(s): Patricia Rodriguez-Tomé |
252   Revealing the Metabolome of Animal Tissues Using 1H Nuclear Magnetic Resonance Spectroscopy       Author : Author(s): Mark R. Viant |
253   RNA Structure Determination by NMR       Author : Author(s): Lincoln G. Scott, Mirko Hennig |
254   Scoring and Validation of Tandem MS Peptide Identification Methods       Author : Author(s): Markus Brosch, Jyoti Choudhary |
255   Selection of Models of DNA Evolution with jModelTest       Author : Author(s): David Posada |
256   Sensitive Detection of SARS Coronavirus RNA by a Novel Asymmetric Multiplex Nested RT-PCR Amplification Coupled With Oligonucleotide Microarray Hybridization       Author : Author(s): Zhi-wei Zhang, Yi-ming Zhou, Yan Zhang, Yong Guo, Sheng-ce Tao, Ze Li, Qiong Zhang, Jing Cheng |
257   Sequence Segmentation       Author : Author(s): Jonathan M. Keith |
258   SeqVis: A Tool for Detecting Compositional Heterogeneity Among Aligned Nucleotide Sequences       Author : Author(s): Lars Sommer Jermiin, Joshua Wing Ho, Kwok Wai Lau, Vivek Jayaswal |
259   Signal Processing in Proteomics       Author : Author(s): Rene Hussong, Andreas Hildebrandt |
260   Similarity Searching Using BLAST       Author : Author(s): Kit J. Menlove, Mark Clement, Keith A. Crandall |
261   Simulated Annealing: An Effective Stochastic Optimization Approach to Computational Library Design       Author : Author(s): Weifan Zheng |
262   Single Cell Analysis on Microfluidic Devices       Author : Author(s): Christopher T. Culbertson |
263   Single Sign-On in a Grid Portal       Author : Author(s): Ramil V. Manansala |
264   Single-Nucleotide Polymorphism and Mutation Identification by the Nanogen Microelectronic Chip Technology       Author : Author(s): Maurizio Ferrari, Laura Cremonesi, Pierangelo Bonini, Barbara Foglieni, Stefania Stenirri |
265   Spectral Library Searching for Peptide Identification via Tandem MS       Author : Author(s): Henry Lam, Ruedi Aebersold |
266   Standardization of Microarray and Pharmacogenomics Data       Author : Author(s): Casey S. Husser, Jeffrey R. Buchhalter, O. Scott Raffo, Amnon Shabo, Steven H. Brown, Karen E., Peter L. |
267   Statistical Analysis of Image Data Provided by Two-Dimensional Gel Electrophoresis for Discovery Proteomics       Author : Author(s): Ben Crossett, Alistair V. Edwards, Melanie Y. White, Stuart J. Cordwell |
268   Statistical Considerations in Assessing Molecular Markers for Cancer Prognosis and Treatment Efficacy       Author : Author(s): James Dignam, John Bryant, Soonmyung Paik |
269   Statistical Contributions to Molecular Biology       Author : Author(s): Emmanuel N. Lazaridis, Gregory C. Bloom |
270   Statistical Methods for Assessing Biomarkers       Author : Author(s): Stephen W. Looney |
271   Statistical Methods for Proteomics       Author : Author(s): Françoise Seillier-Moiseiwitsch, Donald C. Trost, Julian Moiseiwitsch |
272   Strategies for the Identification and Generation of Informative Compound Sets       Author : Author(s): Michael S. Lajiness, Veerabahu Shanmugasundaram |
273   Structure-Based Ab Initio Prediction of Transcription Factor–Binding Sites       Author : Author(s): L. Angela Liu, Joel S. Bader |
274   Surface Modification Methods for Enhanced Device Efficacy and Function       Author : Author(s): Barbara J. Jones, Mark A. Hayes |
275   System Biology of Gene Regulation       Author : Author(s): Michael Baitaluk |
276   Target-Decoy Search Strategy for Mass Spectrometry-Based Proteomics       Author : Author(s): Joshua E. Elias, Steven P. Gygi |
277   Text Mining       Author : Author(s): Andrew B. Clegg, Adrian J. Shepherd |
278   The Bioverse API and Web Application       Author : Author(s): Michal Guerquin, Jason McDermott, Zach Frazier, Ram Samudrala |
279   The Classification of Protein Domains       Author : Author(s): Russell L. Marsden, Christine A. Orengo |
280   The NCBI: Publicly Available Tools and Resources on the Web       Author : Author(s): Jack P. Jenuth |
281   The PeptideAtlas Project       Author : Author(s): Eric W. Deutsch |
282   The Rosetta Stone Method       Author : Author(s): Shailesh V. Date |
283   The Staden Package, 1998       Author : Author(s): Rodger Staden, Kathryn F. Beal, James K. Bonfield |
284   The Use of CLUSTAL W and CLUSTAL X for Multiple Sequence Alignment       Author : Author(s): Ashok Aiyar |
285   The Virtual Library I: Searching MEDLINE       Author : Author(s): Keir Reavie |
286   The Virtual Library II: Science Citation Index and Current Awareness Services       Author : Author(s): Keir Reavie |
287   The Virtual Library III: Electronic Journals, Grants, and Funding Information       Author : Author(s): Keir Reavie |
288   Tissue Microarrays       Author : Author(s): Ronald Simon, Martina Mirlacher, Guido Sauter |
289   Trans-Proteomic Pipeline: A Pipeline for Proteomic Analysis       Author : Author(s): Patrick G. Pedrioli |
290   Transmembrane Protein Models Based on High-Throughput Molecular Dynamics Simulations with Experimental Constraints       Author : Author(s): Andrew J. Beevers, Andreas Kukol |
291   Trees from Trees: Construction of Phylogenetic Supertrees Using Clann       Author : Author(s): Christopher J. Creevey, James O. McInerney |
292   UNAFold: Software for Nucleic Acid Folding and Hybridization       Author : Author(s): Nicholas R. Markham, Michael Zuker |
293   Understanding and Exploiting Peptide Fragment Ion Intensities Using Experimental and Informatic Approaches       Author : Author(s): Ashley C. Gucinski, Eric D. Dodds, Wenzhou Li, Vicki H. Wysocki |
294   Understanding the Roadmap of Metabolism by Pathway Analysis       Author : Author(s): Stefan Schuster, Axel Kamp, Mikhail Pachkov |
295   Unit Automation in High Throughput Screening       Author : Author(s): Karl C. Menke |
296   Use of Primary Human Cells in High-Throughput Screens       Author : Author(s): Angela Dunne, Mike Jowett, Stephen Rees |
297   Using Evolutionary Information to Find Specificity-Determining and Co-evolving Residues       Author : Author(s): Grigory Kolesov, Leonid A. Mirny |
298   Using Recursive Partitioning Analysis to Evaluate Compound Selection Methods       Author : Author(s): S. Stanley Young, Douglas M. Hawkins |
299   Using the PRIDE Proteomics Identifications Database for Knowledge Discovery and Data Analysis       Author : Author(s): Philip Jones, Lennart Martens |
300   Using the WWW to Supply the Molecular Biology Lab       Author : Author(s): MaryAnn Labant, Roger Anderson |
301   Utilizing HapMap and Tagging SNPs       Author : Author(s): Christopher A. Haiman, Daniel O. Stram |
302   Validation and Quality Control of Protein Microarray-Based Analytical Methods       Author : Author(s): Larry J. Kricka, Stephen R. Master |
303   Visualization       Author : Author(s): Falk Schreiber |
304   Visualization and Analysis of Molecular Data       Author : Author(s): Matthias Scholz, Joachim Selbig |
305   Web-Based Interfaces for the GCG Sequence Analysis Programs       Author : Author(s): David D. Womble |
306   Web-Based Resources for Clinical Bioinformatics       Author : Author(s): Anthony M. Joshua, Paul C. Boutros |
307   Whole Genome-Wide Association Study Using Affymetrix SNP Chip: A Two-Stage Sequential Selection Method to Identify Genes That Increase the Risk of Developing Complex Diseases       Author : Author(s): Howard H. Yang, Nan Hu, Philip R. Taylor, Maxwell P. Lee |